All strains

ILSM1230

• Halopseudomonas aestusnigri
Pseudomonadota 99.93% 16S Similarity (Ref: VGXO14) Mahanadi transact • 50 m (Sediment) WGS Sequenced
Search Files in Index
Curated Isolate Taxonomic Identification & Collection Provenance
16S rRNA Similarity: 99.93%
EzCloud Identification & Lineage Hierarchy
Identified Species: Halopseudomonas aestusnigri Ref Strain: VGXO14
Lineage Classification (Top Hit Taxon):
Domain: Bacteria Phylum: Pseudomonadota Class: Gammaproteobacteria Order: Pseudomonadales Family: Pseudomonadaceae Genus: Halopseudomonas
Oceanographic Collection Provenance
Sample Matrix: Sediment
Sampling Location: Mahanadi transact
Collection Depth: 50 m
Transect Distance: —

1. Genomics & WGS Features

Sample-level genome architecture, CAZyme annotation, QUAST assembly statistics, and industrial bioprospecting profiles.

Download WGS CSVs
2,250
Total CDS Genes
39 tRNA • 3 rRNA
2.47 Mbp
Assembly Size
GC: 44.0% • 161 Contigs
91
CAZyme Genes
18 high-confidence (3 tools)
81
Industrial Enzymes
6 Classes detected
Detailed Genome & Assembly Metrics
Isolate Identifier ILSM1230 Assembly Type Draft
Total CDS Genes 2,250 Total Assembly Length 2,469,506 bp (2.47 Mbp)
tRNA / rRNA Genes 39 tRNA / 3 rRNA GC Content (%) 44.03%
Simple Repeats / Low-Complexity 44 repeats / 7 low-comp Contigs / N50 161 contigs • N50: 35,747 bp (L50 = 23)
CAZyme Classes (GH/GT/CE/PL/AA/CBM) 37 GH • 32 GT • 6 CE • 0 PL • 9 AA • 14 CBM N90 / auN Metric N90: 9,283 bp • auN: 38,846.8
Industrial Enzymes Detected 81 genes across 6 classes (Protease, Lignin peroxidase, Phosphatase, Esterase, Glutaminase, Laccase)

2. Proteomics

Protein profiles — coming soon

Accession-level abundance and UniProt/NCBI mappings will appear here.

3. Metabolomics and Bioprospecting

No metabolomics screening data for ILSM1230

Metabolite profiling for this strain is currently pending laboratory extraction and LC-MS analysis.