All strains

ILSM1625

• Pseudomonas rhizovicinus
Pseudomonadota 99.39% 16S Similarity (Ref: M30-35) Vizag transact • 20 m (Water) WGS Sequenced
Search Files in Index
Curated Isolate Taxonomic Identification & Collection Provenance
16S rRNA Similarity: 99.39%
EzCloud Identification & Lineage Hierarchy
Identified Species: Pseudomonas rhizovicinus Ref Strain: M30-35
Lineage Classification (Top Hit Taxon):
Domain: Bacteria Phylum: Pseudomonadota Class: Gammaproteobacteria Order: Pseudomonadales Family: Pseudomonadaceae Genus: Pseudomonas
Oceanographic Collection Provenance
Sample Matrix: Water
Sampling Location: Vizag transact
Collection Depth: 20 m
Transect Distance: 10 m

1. Genomics & WGS Features

Sample-level genome architecture, CAZyme annotation, QUAST assembly statistics, and industrial bioprospecting profiles.

Download WGS CSVs
4,527
Total CDS Genes
72 tRNA • 3 rRNA
4.60 Mbp
Assembly Size
GC: 55.9% • 532 Contigs
158
CAZyme Genes
43 high-confidence (3 tools)
150
Industrial Enzymes
9 Classes detected
Detailed Genome & Assembly Metrics
Isolate Identifier ILSM1625 Assembly Type Draft
Total CDS Genes 4,527 Total Assembly Length 4,604,490 bp (4.60 Mbp)
tRNA / rRNA Genes 72 tRNA / 3 rRNA GC Content (%) 55.94%
Simple Repeats / Low-Complexity 102 repeats / 5 low-comp Contigs / N50 532 contigs • N50: 19,221 bp (L50 = 69)
CAZyme Classes (GH/GT/CE/PL/AA/CBM) 63 GH • 66 GT • 10 CE • 2 PL • 13 AA • 8 CBM N90 / auN Metric N90: 3,563 bp • auN: 22,911.6
Industrial Enzymes Detected 150 genes across 9 classes (Lignin peroxidase, Protease, Phosphatase, Esterase, Glutaminase, Urease, Lipase, Laccase...)

2. Proteomics

Protein profiles — coming soon

Accession-level abundance and UniProt/NCBI mappings will appear here.

3. Metabolomics and Bioprospecting

No metabolomics screening data for ILSM1625

Metabolite profiling for this strain is currently pending laboratory extraction and LC-MS analysis.