All strains

ILSM2088

• Pseudomonas aeruginosa
Pseudomonadota 100% 16S Similarity (Ref: JCM 5962) Chilika transact • 20 m (Water) WGS Sequenced
Search Files in Index
Curated Isolate Taxonomic Identification & Collection Provenance
16S rRNA Similarity: 100%
EzCloud Identification & Lineage Hierarchy
Identified Species: Pseudomonas aeruginosa Ref Strain: JCM 5962
Lineage Classification (Top Hit Taxon):
Domain: Bacteria Phylum: Pseudomonadota Class: Gammaproteobacteria Order: Pseudomonadales Family: Pseudomonadaceae Genus: Pseudomonas
Oceanographic Collection Provenance
Sample Matrix: Water
Sampling Location: Chilika transact
Collection Depth: 20 m
Transect Distance: Surface

1. Genomics & WGS Features

Sample-level genome architecture, CAZyme annotation, QUAST assembly statistics, and industrial bioprospecting profiles.

Download WGS CSVs
12,614
Total CDS Genes
172 tRNA • 15 rRNA
14.34 Mbp
Assembly Size
GC: 57.3% • 3643 Contigs
408
CAZyme Genes
127 high-confidence (3 tools)
393
Industrial Enzymes
11 Classes detected
Detailed Genome & Assembly Metrics
Isolate Identifier ILSM2088 Assembly Type Draft
Total CDS Genes 12,614 Total Assembly Length 14,335,822 bp (14.34 Mbp)
tRNA / rRNA Genes 172 tRNA / 15 rRNA GC Content (%) 57.29%
Simple Repeats / Low-Complexity 1265 repeats / 56 low-comp Contigs / N50 3643 contigs • N50: 84,200 bp (L50 = 45)
CAZyme Classes (GH/GT/CE/PL/AA/CBM) 161 GH • 167 GT • 25 CE • 4 PL • 22 AA • 50 CBM N90 / auN Metric N90: — • auN: —
Industrial Enzymes Detected 393 genes across 11 classes (Lignin peroxidase, Protease, Phosphatase, Esterase, Glutaminase, Urease, Lipase, Laccase...)

2. Proteomics

Protein profiles — coming soon

Accession-level abundance and UniProt/NCBI mappings will appear here.

3. Metabolomics and Bioprospecting

No metabolomics screening data for ILSM2088

Metabolite profiling for this strain is currently pending laboratory extraction and LC-MS analysis.