All strains

ILSM3130

• Pseudomonas toyotomiensis
Pseudomonadota 99.93% 16S Similarity (Ref: HT-3) Godavari transact • Sediment (Sediment) WGS Sequenced
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Curated Isolate Taxonomic Identification & Collection Provenance
16S rRNA Similarity: 99.93%
EzCloud Identification & Lineage Hierarchy
Identified Species: Pseudomonas toyotomiensis Ref Strain: HT-3
Lineage Classification (Top Hit Taxon):
Domain: Bacteria Phylum: Pseudomonadota Class: Gammaproteobacteria Order: Pseudomonadales Family: Pseudomonadaceae Genus: Pseudomonas
Oceanographic Collection Provenance
Sample Matrix: Sediment
Sampling Location: Godavari transact
Collection Depth: Sediment
Transect Distance: 20 m

1. Genomics & WGS Features

Sample-level genome architecture, CAZyme annotation, QUAST assembly statistics, and industrial bioprospecting profiles.

Download WGS CSVs
4,899
Total CDS Genes
78 tRNA • 3 rRNA
5.33 Mbp
Assembly Size
GC: 62.8% • 97 Contigs
173
CAZyme Genes
53 high-confidence (3 tools)
182
Industrial Enzymes
9 Classes detected
Detailed Genome & Assembly Metrics
Isolate Identifier ILSM3130 Assembly Type Draft
Total CDS Genes 4,899 Total Assembly Length 5,334,135 bp (5.33 Mbp)
tRNA / rRNA Genes 78 tRNA / 3 rRNA GC Content (%) 62.79%
Simple Repeats / Low-Complexity 415 repeats / 11 low-comp Contigs / N50 97 contigs • N50: 161,286 bp (L50 = 11)
CAZyme Classes (GH/GT/CE/PL/AA/CBM) 68 GH • 72 GT • 7 CE • 5 PL • 14 AA • 14 CBM N90 / auN Metric N90: 38,282 bp • auN: 175,937.8
Industrial Enzymes Detected 182 genes across 9 classes (Lignin peroxidase, Protease, Phosphatase, Glutaminase, Esterase, Lipase, Urease, Alginate lyase...)

2. Proteomics

Protein profiles — coming soon

Accession-level abundance and UniProt/NCBI mappings will appear here.

3. Metabolomics and Bioprospecting

No metabolomics screening data for ILSM3130

Metabolite profiling for this strain is currently pending laboratory extraction and LC-MS analysis.